From my experience the running symptoms you describe could be caused by a cam that is 1 tooth off. Mis-marked or hard to decipher timing marks on gears can create issues.
Unless you are creating a race engine and need to know exactly where your cam is a simple easy check for you is to remove the valve cover on #1 cylinder side and the spark plug from #1 cylinder. Turn the engine over by hand with someone holding a long screwdriver through the spark plug hole to determine when the piston is at top dead center and the timing mark is aligned with the pointer.
If the timing mark on the front dampner has slipped you should be able to get a rough idea by rocking the engine back and forth to determine it, but it must be aligned with the pointer when the piston is at top dead center or you ignition timing cannot be set correctly.
At top dead center of the firing stroke both valves will be closed completely, even if the valve timing is off. Rotate the engine so it is on the overlap stroke. Both valves should be slightly open, one is closing and the other is opening. If they are not visually equal when the piston is at top dead center and the timing mark is aligned the camshaft is out of time.
If they are both open the same amount your problem is somewhere else.
Lyle Haley
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